Identification of Function and Mechanism of Apolipoprotein
H Gene in Liver Failure Based on Bioinformatics Analysis
中山大学学报(医学科学版)2020年41卷第2期
作者机构:
作者简介:
基金信息:
国家自然科学基金(81773176);中山大学高校基本科研业务费项目(19ykyjs01)
DOI:
中图分类号:R57
网络首发:2020-03-25,
纸质出版:2020
稿件说明:
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曹静, 龚娇, 李新华, 等. 基于生物信息学途径探究载脂蛋白 H 在肝衰竭中的功能及作用机制[J]. 中山大学学报(医学科学版), 2020,41(2).
CAO Jing, GONG Jiao, LI Xin-hua, et al. Identification of Function and Mechanism of Apolipoprotein
H Gene in Liver Failure Based on Bioinformatics Analysis[J]. Journal of Sun Yat-sen University (Medical Sciences), 2020, 41(2).
曹静, 龚娇, 李新华, 等. 基于生物信息学途径探究载脂蛋白 H 在肝衰竭中的功能及作用机制[J]. 中山大学学报(医学科学版), 2020,41(2).DOI:
CAO Jing, GONG Jiao, LI Xin-hua, et al. Identification of Function and Mechanism of Apolipoprotein
H Gene in Liver Failure Based on Bioinformatics Analysis[J]. Journal of Sun Yat-sen University (Medical Sciences), 2020, 41(2).DOI:
【Objective】To explore the function and mechanism of differentially expressed Apolipoprotein H(APOH) gene in liver failure by bioinformatics. 【Methods】Multiple chip datasets(GSE14688,GSE38941 and GSE96851) were downloaded from the Gene Expression Omnibus (CEO)database. The differentially expressed genes were screened out based on value < 0.05 and |log2FC| > 5. Biological function enrichment and KEGG pathway analysis of APOH gene, which was among the top ten key genes screened,was analyzed by Cytoscape and R,for further validation of expression of APOH in chronic hepatitis B virus-related liver failure.【Results】A total of 2 438 differentially expressed genes were screened,among which 1 162 were significantly up-regulated and 1 276 were significantly down-regulated. According to Protein-protein Interaction Network(PPIN)analysis,the top ten key genes were KNG1,IGF1,SPARC,APOH,CLU, SERPING1,TGFB2,CDC37L1,PCYOX1L and APOOL. High expression of APOH was found in chronic hepatitis B virus- related liver failure tissues and GeneMANIA predicted that APOH was associated with inflammation. GO analysis and KEGG analysis showed that APO,which was closely related to complement/coagulation cascade pathway and carbon metabolism pathway,positively correlated with C3(complement C3).【Conclusion】APOH is involved in the occurrence and development of liver failure by C3 regulating complement/coagulation cascade pathway and carbon metabolism pathway.