医学院遗传室MPS科研组,广东,广州,510080
网络首发:2018-11-20,
纸质出版:2018
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郭东炜, 潘伟绵, 杜敏联, 等. Maroteaux-Lamy综合征的ARSB基因分析及新突变的致病性鉴定[J]. 中山大学学报(医学科学版), 2018,39(6).
ARSB Gene Analysis and Novel Mutation Pathogenicity Identication of Maroteaux-Lamy Syndrome[J]. Journal of Sun Yat-sen University (Medical Sciences), 2018, 39(6).
【目的】对7家拟诊为Maroteaux_Lamy综合征(MPSⅥ)的患儿及其父母进行ARSB基因的突变检测 和新突变的致病性鉴定,以揭示其分子发病机制,为将来的产前/植入前基因诊断等创造前提条件。【方法】在 临床初诊及GAG尿检和MPS酶检的基础上,抽取患儿及其父母EDTA抗凝血,进行ARSB基因的PCR扩增和 Sanger测序。对所发现的新突变,在经HGMD、1000G和ExAC等数据库核实排查后,首先用SWISS-MODEL软件 分析、比对突变蛋白和正常蛋白的空间构象,然后用ClustalX软件分析跨物种氨基酸的保守性,用PROVEAN、 SIFT、PolyPhen-2软件预测新突变的致病性,最后用ACMG标准对新突变的致病性进行综合分析鉴定。【结果】 1) 7个家系先证者的基因检测结果分别为:No1: c.574T>C,p.C192R纯合错义突变;No2: c.160G>A/p.D54N(来 自其母)和c.1197C>G/p.F399L(来自其父)的复合杂合子;No3:仅检出c.1072G>A/p.V358M和IVS5as(-27)A> C变异,但酶检和临床表型符合VI型;No4:为c.281C>T,p.S94L(新突变,来自其母)和IVS5as(-27)A>C(来自 其父)的复合杂合子;No5:为c.1197C>G,p.F399L纯合错义突变;No6:为c.1197C>G,p.F399L(来自其母)和 c.1379C>T,p.S460F(新突变,来自其父)的复合杂合子;No7:为c.499G>A,p.G167R(来自其父)和c.1325C> T,p.T442M(来自其母)的复合杂合子。2)新突变鉴定结果:对正常ARSB酶蛋白和p.S94L突变酶蛋白的空间构 象的预测比对结果显示,两者有明显区别;跨物种保守性分析结果显示, p.94突变点所在氨基酸(S)在物种进化 过程中具有高度保守性;PROVEAN、SIFT和PolyPhen-2软件对p.S94L预测结果分别为:Deleterious、Damaging和 Probablydamaging。用上述方法对p.S460F的预测结果及ACMG的综合分析结果也显示该突变可能是致病性 的。【结论】1)家系4的p.S94L和家系6的p.S460F新突变可能都是新的致病性突变,有可能都是引起患儿发病 的内在原因之一。2)家系1, 2, 5, 6, 7可以确诊为MPSVI型,其基因型和表现型具有显著的相关性,家系3虽经 酶检确诊,临床症状和尿检结果也都与MPSVI型符合,但却未能在DNA水平查到明确的突变类型,其表现型与 基因型的相关性还有待进一步证实。
【Objective】To reveal the molecular genetic mechanism of 7 cases that suspected Maroteaux_Lamy syndrome(MPSⅥ),we analyze the ARSB gene of proband and their parents and identify the pathogenicity of novel mutation,which lay foundation for prenatal diagnosis or preimplantation genetic diagnosis(PGD)in the future. 【Methods】On the basis of clinical preliminary diagnosis,GAG urinetest and the detection of MPS enzyme activity,and the EDTA anti-coagulated blood was collected from proband and their parents then perform PCR amplification and Sanger sequencing of the ARSB gene. After the novel mutations were detected and verified by databases such as HGMD,1000G and ExAC. At first,spatial conformation of mutant protein and normal protein were analyzed and compared by SWISS MODEL.Then conservation analysis of cross-species amino acids by Clustal X. What’s more,pathogenicity prediction methods including PROVEAN,SIFT and PolyPhen-2 were applied. Finally,the pathogenicity of the novel mutation was comprehensively analyzed and identified by ACMG standard.【Results】 1)The genetictest results of the 7 family proband were as follows. Family 1,c.574T>C/p.C192R homozygousmissense mutation.Family2,c.160G>A/p.D54N(from mother)and c.1197C>G/p.F399L(from father)compound heterozygote. Family3,except for c.1072G>A/p.V358Mand IVS5as(-27)A>C,no other mutations were found in the rest exons but the enzymatic and clinical phenotypes were in accordance with MPStypeVI. Family4,c.281C>T/p.S94L(novel mutation,from mother)and IVS5 as(-27)A>C (from father)compound heterozygote. Family 5,c.1197 C > G/. F399L homozygous missense mutation. Family 6, c.1197C > G/p.F399L(from mother)and c.1379C > T/p.S460F(novel mutation,from father)compound heterozygote. Family 7,c.499G>A/p.G167R(from father)and c.1325C>T,p.T442M(from mother)compound heterozygote. 2) Identification results of novel mutation. The spatial conformation predictions for normal ARSB enzyme protein and p.S94L mutant enzyme protein show that the reisaclear difference between them,cross-species conservation analysis results show that the amino acid at the mutation point has a high degree of evolution in the species conservatism. PROVEAN, SIFT and PolyPhen-2 predictions results are Deleterious,Damaging and Probably damaging. The predicted results of above methods for p.S460F and the analysis results of ACMG also indicate that the mutation may be pathogenic. 【Conclusion】1)The new mutation in p.S94L in family 4 and p.S460F in family6 maybe novel pathogenic mutations, which may be one of the intrinsic causes of children with disease. 2)Family1, 2, 5, 6, 7 can be diagnosed as MPS type VI,and its genotype and phenotype have significant correlation. Although family 3 was diagnosed as MPS type VI by enzymatic examination,clinical symptoms and urine test results. We failed to find clear mutations at DNA level in ARSB gene,so the correlation between its phenotypeand genotype remains to be further confirmed.
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